PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000247896
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 316aa    MW: 35938.2 Da    PI: 4.9401
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000247896genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.91.2e-29130187258
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                    +D ++WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers ++p++++itY+ eHnh
  MDP0000247896 130 SDVWAWRKYGQKPIKGSPYPRSYYRCSSSkGCSARKQVERSCSNPETFIITYTAEHNH 187
                    79*************************998**************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-30115189IPR003657WRKY domain
PROSITE profilePS5081133.109124190IPR003657WRKY domain
SuperFamilySSF1182903.53E-25126190IPR003657WRKY domain
SMARTSM007745.4E-32129189IPR003657WRKY domain
PfamPF031064.9E-25131187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MENWDLQAVV RGCNNNIDEV MEDSQIPYFC APLSFQEDNE LFAAKFPQAF EATTTLDELE  60
ELYKPFYPVF QLTTPPTILT SSISVPQEII TLAPKLIKNM EESTPVRKRI SRKNQNKRVV  120
KEVKAEDLFS DVWAWRKYGQ KPIKGSPYPR SYYRCSSSKG CSARKQVERS CSNPETFIIT  180
YTAEHNHVYP TRRNSLAGST RSKFSSSKNK DKCGSSLNSP ATPNIAASIE DDREFVESVN  240
INAVKVEAKL SEQDEISKEN FFLDTTVNDE IFPSLEDLDR KLEPVMDGWF SDEFSDNFPS  300
PWFNIKGHSN TVTGAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-20120190877Probable WRKY transcription factor 4
2lex_A8e-20120190877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302311e-129leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0136834e-98GU013683.1 Malus x domestica transcription factor WRKY (WRKY) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375964.10.0PREDICTED: probable WRKY transcription factor 29
SwissprotQ9SUS17e-62WRK29_ARATH; Probable WRKY transcription factor 29
TrEMBLM5WSN21e-148M5WSN2_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.11e-38WRKY family protein